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LABEL MATRIX 8.0 PORTABLE Full.rar 👍





 
 
 
 
 
 
 

LABEL MATRIX 8.0 FULL.rar

peptide masses from all detected samples were compared with the reference list to determine a relation between the four software packages. the peptide masses that identified the same proteins were counted (peptide masses of the software packages were generally not completely identical in the reference list). peptides having a probability of identification of less than 10% were excluded from the comparison, this being the result of the parameters used in identification by the software packages (additional file 11). it should be noticed that a missing mass tag in the reference list was not counted as an identification. furthermore, only the most abundant peptides having a protein score of at least 10 were considered for the comparison. the number of identified peptides with identical masses is slightly higher in the software packages with a higher computational power.

the identification results of the peptrix software packages are displayed in table 4. peptides having a mass error of up to 5 ppm or ms2 spectra failing to trigger fragmentation and sequencing are not considered in the identification. the set of proteins found by all software packages show substantial differences. peptrix and progenesis both found more proteins that contained more peptides and amino acid sequences. the proteins detected by only one software package may be attributed to false identifications (see “incomplete/mass missing (3)”) in the search results. ms2 spectra, usually serving to validate identifications of ms1 spectra of lower intensity, are not included as a quality standard for confirmation of identifications. it is only included in the table of identifications if fragmentation and sequencing was successful.

peptide masses from all detected samples were compared with the reference list to determine a relation between the four software packages. the peptide masses that identified the same proteins were counted (peptide masses of the software packages were generally not completely identical in the reference list). peptides having a probability of identification of less than 10% were excluded from the comparison, this being the result of the parameters used in identification by the software packages (additional file 11). it should be noticed that a missing mass tag in the reference list was not counted as an identification. furthermore, only the most abundant peptides having a protein score of at least 10 were considered for the comparison. the number of identified peptides with identical masses is slightly higher in the software packages with a higher computational power.
the identification results of the peptrix software packages are displayed in table 4. peptides having a mass error of up to 5 ppm or ms2 spectra failing to trigger fragmentation and sequencing are not considered in the identification. the set of proteins found by all software packages show substantial differences. peptrix and progenesis both found more proteins that contained more peptides and amino acid sequences. the proteins detected by only one software package may be attributed to false identifications (see “incomplete/mass missing (3)”) in the search results. ms2 spectra, usually serving to validate identifications of ms1 spectra of lower intensity, are not included as a quality standard for confirmation of identifications. it is only included in the table of identifications if fragmentation and sequencing was successful.
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